Pragmatic Bioinformatics: Human Genome in 5 Minutes
A brief tutorial that illustrates how to download the uniprot protein database, extract the human proteome, and then analyze the sequences with the PDB solved 3D structure database. More at pragmaticbioinformatics.blogspot.org
December 13th, 2009 at 8:45 pm
hey, that wasnt five minutes asshole. jk! : )
December 13th, 2009 at 9:17 pm
I have no idea what you’re talking about, however, the picture does look like DNA. And there does appear to be a computer program involved, but the rest sounds like someone mumbling something in the background.
December 13th, 2009 at 9:30 pm
nice work … but could’nt see anything …so of no use….. nothign to learn from it ..
December 13th, 2009 at 10:16 pm
?! wow
December 13th, 2009 at 10:38 pm
Hey Sammi,
Thanks for the comments. I do most of my work on Redhat or OSX. The example script I run in the video doesn’t use bioperl, although I’m also a fan. If you are still interested in teh code let me know and I’ll post it somewhere.
December 13th, 2009 at 10:44 pm
Informative vid thanks. I’m wondering about your prog for filtering FASTA format files, I’m a follower of the BioPerl project and theres good modules in there for doing stuff like FASTA filtering.
I’m interested in what OS you’re running on (what do you generally use for bioinformatics work)?
Its kinda fuzzy and can’t really see all of your shell output and such.
Anyways, thanks.